cymobase | species

Species

Cymobase Content

Drosophila simulans str. M252 | Dss_i Drosophila simulans (Species Group)

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Sophophora | melanogaster group | melanogaster subgroup ]

Drosophila simulans str. Mosaic | Dss Drosophila simulans (Species Group)

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Sophophora | melanogaster group | melanogaster subgroup ]

Drosophila simulans str. c1674 | Dss_b Drosophila simulans (Species Group)

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Sophophora | melanogaster group | melanogaster subgroup ]

Drosophila simulans str. md106 | Dss_f Drosophila simulans (Species Group)

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Sophophora | melanogaster group | melanogaster subgroup ]

Drosophila simulans str. md199 | Dss_g Drosophila simulans (Species Group)

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Sophophora | melanogaster group | melanogaster subgroup ]

Drosophila simulans str. nc48 | Dss_e Drosophila simulans (Species Group)

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Sophophora | melanogaster group | melanogaster subgroup ]

Drosophila simulans str. sim4 | Dss_d Drosophila simulans (Species Group)

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Sophophora | melanogaster group | melanogaster subgroup ]

Drosophila simulans str. sim6 | Dss_c Drosophila simulans (Species Group)

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Sophophora | melanogaster group | melanogaster subgroup ]

Drosophila simulans str. tsimbazaza | Dss_h Drosophila simulans (Species Group)

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Sophophora | melanogaster group | melanogaster subgroup ]

Drosophila simulans str. white501 | Dss_a Drosophila (Species Group)

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Sophophora | melanogaster group | melanogaster subgroup ]

Drosophila simulans str. M252 | Dss_i Drosophila simulans (Species Group) [ Opisthokonta | Metazoa | Eumetazoa | . . . . . . | Sophophora | melanogaster group | melanogaster subgroup ]

Drosophila simulans str. Mosaic | Dss Drosophila simulans (Species Group) [ Opisthokonta | Metazoa | Eumetazoa | . . . . . . | Sophophora | melanogaster group | melanogaster subgroup ]

Drosophila simulans str. c1674 | Dss_b Drosophila simulans (Species Group) [ Opisthokonta | Metazoa | Eumetazoa | . . . . . . | Sophophora | melanogaster group | melanogaster subgroup ]

Drosophila simulans str. md106 | Dss_f Drosophila simulans (Species Group) [ Opisthokonta | Metazoa | Eumetazoa | . . . . . . | Sophophora | melanogaster group | melanogaster subgroup ]

Drosophila simulans str. md199 | Dss_g Drosophila simulans (Species Group) [ Opisthokonta | Metazoa | Eumetazoa | . . . . . . | Sophophora | melanogaster group | melanogaster subgroup ]

Drosophila simulans str. nc48 | Dss_e Drosophila simulans (Species Group) [ Opisthokonta | Metazoa | Eumetazoa | . . . . . . | Sophophora | melanogaster group | melanogaster subgroup ]

Drosophila simulans str. sim4 | Dss_d Drosophila simulans (Species Group) [ Opisthokonta | Metazoa | Eumetazoa | . . . . . . | Sophophora | melanogaster group | melanogaster subgroup ]

Drosophila simulans str. sim6 | Dss_c Drosophila simulans (Species Group) [ Opisthokonta | Metazoa | Eumetazoa | . . . . . . | Sophophora | melanogaster group | melanogaster subgroup ]

Drosophila simulans str. tsimbazaza | Dss_h Drosophila simulans (Species Group) [ Opisthokonta | Metazoa | Eumetazoa | . . . . . . | Sophophora | melanogaster group | melanogaster subgroup ]

Drosophila simulans str. white501 | Dss_a Drosophila (Species Group) [ Opisthokonta | Metazoa | Eumetazoa | . . . . . . | Sophophora | melanogaster group | melanogaster subgroup ]

Drosophila simulans str. M252 | Dss_i Drosophila simulans (Species Group)

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Sophophora | melanogaster group | melanogaster subgroup ]

Drosophila simulans str. Mosaic | Dss Drosophila simulans (Species Group)

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Sophophora | melanogaster group | melanogaster subgroup ]

Drosophila simulans str. c1674 | Dss_b Drosophila simulans (Species Group)

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Sophophora | melanogaster group | melanogaster subgroup ]

Drosophila simulans str. md106 | Dss_f Drosophila simulans (Species Group)

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Sophophora | melanogaster group | melanogaster subgroup ]

Drosophila simulans str. md199 | Dss_g Drosophila simulans (Species Group)

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Sophophora | melanogaster group | melanogaster subgroup ]

Drosophila simulans str. nc48 | Dss_e Drosophila simulans (Species Group)

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Sophophora | melanogaster group | melanogaster subgroup ]

Drosophila simulans str. sim4 | Dss_d Drosophila simulans (Species Group)

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Sophophora | melanogaster group | melanogaster subgroup ]

Drosophila simulans str. sim6 | Dss_c Drosophila simulans (Species Group)

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Sophophora | melanogaster group | melanogaster subgroup ]

Drosophila simulans str. tsimbazaza | Dss_h Drosophila simulans (Species Group)

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Sophophora | melanogaster group | melanogaster subgroup ]

Drosophila simulans str. white501 | Dss_a Drosophila (Species Group)

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Sophophora | melanogaster group | melanogaster subgroup ]

Taxonomy:	Eukaryota \| Opisthokonta \| Metazoa \| Eumetazoa \| Bilateria \| Protostomia \| Ecdysozoa \| Panarthropoda \| Arthropoda \| Mandibulata \| Pancrustacea \| Hexapoda \| Insecta \| Dicondylia \| Pterygota \| Neoptera \| Holometabola \| Diptera \| Brachycera \| Muscomorpha \| Eremoneura \| Cyclorrhapha \| Schizophora \| Acalyptratae \| Ephydroidea \| Drosophilidae \| Drosophilinae \| Drosophilini \| Drosophila \| Sophophora \| melanogaster group \| melanogaster subgroup
Comment:	This line is derived from flies collected in Kenya. It was inbred by sib-pair mating for seven generations by John Roote in the Ashburner lab, and an additional six generations at UC-Davis.
		Go to NCBI Taxonomy (7240)
		Encyclopedia of life
		Wikipedia

Picture Source

Taxonomy:	Eukaryota \| Opisthokonta \| Metazoa \| Eumetazoa \| Bilateria \| Protostomia \| Ecdysozoa \| Panarthropoda \| Arthropoda \| Mandibulata \| Pancrustacea \| Hexapoda \| Insecta \| Dicondylia \| Pterygota \| Neoptera \| Holometabola \| Diptera \| Brachycera \| Muscomorpha \| Eremoneura \| Cyclorrhapha \| Schizophora \| Acalyptratae \| Ephydroidea \| Drosophilidae \| Drosophilinae \| Drosophilini \| Drosophila \| Sophophora \| melanogaster group \| melanogaster subgroup
Comment:	The Release 1.0 D. simulans assembly represents a mosaic of several different D. simulans lines. The assembly process began with an ~4X WGS assembly of the the D. simulans w501 line. The w501 contigs were initially anchored, ordered and oriented by alignment with the D. melanogaster genome. The assembly was then examined for places where the w501 assembly suggested inversions with respect to the D. melanogaster assembly. One major inversion was found, confirming the already documented inversion found by Lemeunier and Ashburner (1976). Six other D. simulans lines (c167.4, md106ts, md199s, nc48s, sim4, and sim6) were assembled with ~1X coverage. Using the 4X WGS assembly of the simulans w501 genome as a scaffold, contigs and unplaced reads from the 1X assemblies of the other individual D. simulans lines were used to cover gaps in the w501 assembly where possible. Thus the resulting assembly is a mosaic containing the w501 contigs as the primary scaffolding, with contigs and unplaced reads from the other lines filling gaps in the w501 assembly.
		Go to NCBI Taxonomy (7240)
		Encyclopedia of life
		Wikipedia

Projects:
			e! Ensembl: Drosophila simulans



			FlyBase: A Database of the Drosophila Genome



			National Center for Biotechnology Information: NCBI Insect Genomes Project



			The Genome Sequencing Center at Washington University: Drosophila simulans Sequencing



			UCSC Genome Bioinformatics: Drosophila simulans Genome Browser Gateway

Publication:

Clark AG, Eisen MB, Smith DR et. al.

(2007)

Evolution of genes and genomes on the Drosophila phylogeny.

Nature 450, 203-218.

10.1038/nature06341

Picture Source

Taxonomy:	Eukaryota \| Opisthokonta \| Metazoa \| Eumetazoa \| Bilateria \| Protostomia \| Ecdysozoa \| Panarthropoda \| Arthropoda \| Mandibulata \| Pancrustacea \| Hexapoda \| Insecta \| Dicondylia \| Pterygota \| Neoptera \| Holometabola \| Diptera \| Brachycera \| Muscomorpha \| Eremoneura \| Cyclorrhapha \| Schizophora \| Acalyptratae \| Ephydroidea \| Drosophilidae \| Drosophilinae \| Drosophilini \| Drosophila \| Sophophora \| melanogaster group \| melanogaster subgroup
Comment:	This line is derived from flies collected in Kenya. It was inbred by sib-pair mating for seven generations by John Roote in the Ashburner lab, and an additional six generations at UC-Davis.
		Go to NCBI Taxonomy (7240)
		Encyclopedia of life
		Wikipedia

Projects:
			National Center for Biotechnology Information: NCBI Insect Genomes Project



			The Genome Sequencing Center at Washington University: Drosophila simulans Sequencing

Publication:

Clark AG, Eisen MB, Smith DR et. al.

(2007)

Evolution of genes and genomes on the Drosophila phylogeny.

Nature 450, 203-218.

10.1038/nature06341

Picture Source

Taxonomy:	Eukaryota \| Opisthokonta \| Metazoa \| Eumetazoa \| Bilateria \| Protostomia \| Ecdysozoa \| Panarthropoda \| Arthropoda \| Mandibulata \| Pancrustacea \| Hexapoda \| Insecta \| Dicondylia \| Pterygota \| Neoptera \| Holometabola \| Diptera \| Brachycera \| Muscomorpha \| Eremoneura \| Cyclorrhapha \| Schizophora \| Acalyptratae \| Ephydroidea \| Drosophilidae \| Drosophilinae \| Drosophilini \| Drosophila \| Sophophora \| melanogaster group \| melanogaster subgroup
Comment:	This line is derived from flies collected in Madagascar by Bill Ballard. It was inbred by sib-pair mating for five generations by Bill Ballard at Univ. of Iowa, and an additional five generations at UC-Davis.
		Go to NCBI Taxonomy (7240)
		Encyclopedia of life
		Wikipedia

Projects:
			National Center for Biotechnology Information: NCBI Insect Genomes Project



			The Genome Sequencing Center at Washington University: Drosophila simulans Sequencing

Publication:

Clark AG, Eisen MB, Smith DR et. al.

(2007)

Evolution of genes and genomes on the Drosophila phylogeny.

Nature 450, 203-218.

10.1038/nature06341

Picture Source

Taxonomy:	Eukaryota \| Opisthokonta \| Metazoa \| Eumetazoa \| Bilateria \| Protostomia \| Ecdysozoa \| Panarthropoda \| Arthropoda \| Mandibulata \| Pancrustacea \| Hexapoda \| Insecta \| Dicondylia \| Pterygota \| Neoptera \| Holometabola \| Diptera \| Brachycera \| Muscomorpha \| Eremoneura \| Cyclorrhapha \| Schizophora \| Acalyptratae \| Ephydroidea \| Drosophilidae \| Drosophilinae \| Drosophilini \| Drosophila \| Sophophora \| melanogaster group \| melanogaster subgroup
		Go to NCBI Taxonomy (7240)
		Encyclopedia of life
		Wikipedia

Projects:
			National Center for Biotechnology Information: NCBI Insect Genomes Project



			The Genome Sequencing Center at Washington University: Drosophila simulans Sequencing

Publication:

Clark AG, Eisen MB, Smith DR et. al.

(2007)

Evolution of genes and genomes on the Drosophila phylogeny.

Nature 450, 203-218.

10.1038/nature06341

Picture Source

Taxonomy:	Eukaryota \| Opisthokonta \| Metazoa \| Eumetazoa \| Bilateria \| Protostomia \| Ecdysozoa \| Panarthropoda \| Arthropoda \| Mandibulata \| Pancrustacea \| Hexapoda \| Insecta \| Dicondylia \| Pterygota \| Neoptera \| Holometabola \| Diptera \| Brachycera \| Muscomorpha \| Eremoneura \| Cyclorrhapha \| Schizophora \| Acalyptratae \| Ephydroidea \| Drosophilidae \| Drosophilinae \| Drosophilini \| Drosophila \| Sophophora \| melanogaster group \| melanogaster subgroup
		Go to NCBI Taxonomy (7240)
		Encyclopedia of life
		Wikipedia

Projects:
			National Center for Biotechnology Information: NCBI Insect Genomes Project



			The Genome Sequencing Center at Washington University: Drosophila simulans Sequencing

Publication:

Clark AG, Eisen MB, Smith DR et. al.

(2007)

Evolution of genes and genomes on the Drosophila phylogeny.

Nature 450, 203-218.

10.1038/nature06341

Picture Source

Taxonomy:	Eukaryota \| Opisthokonta \| Metazoa \| Eumetazoa \| Bilateria \| Protostomia \| Ecdysozoa \| Panarthropoda \| Arthropoda \| Mandibulata \| Pancrustacea \| Hexapoda \| Insecta \| Dicondylia \| Pterygota \| Neoptera \| Holometabola \| Diptera \| Brachycera \| Muscomorpha \| Eremoneura \| Cyclorrhapha \| Schizophora \| Acalyptratae \| Ephydroidea \| Drosophilidae \| Drosophilinae \| Drosophilini \| Drosophila \| Sophophora \| melanogaster group \| melanogaster subgroup
		Go to NCBI Taxonomy (7240)
		Encyclopedia of life
		Wikipedia

Projects:
			National Center for Biotechnology Information: NCBI Insect Genomes Project



			The Genome Sequencing Center at Washington University: Drosophila simulans Sequencing

Publication:

Clark AG, Eisen MB, Smith DR et. al.

(2007)

Evolution of genes and genomes on the Drosophila phylogeny.

Nature 450, 203-218.

10.1038/nature06341

Picture Source

Taxonomy:	Eukaryota \| Opisthokonta \| Metazoa \| Eumetazoa \| Bilateria \| Protostomia \| Ecdysozoa \| Panarthropoda \| Arthropoda \| Mandibulata \| Pancrustacea \| Hexapoda \| Insecta \| Dicondylia \| Pterygota \| Neoptera \| Holometabola \| Diptera \| Brachycera \| Muscomorpha \| Eremoneura \| Cyclorrhapha \| Schizophora \| Acalyptratae \| Ephydroidea \| Drosophilidae \| Drosophilinae \| Drosophilini \| Drosophila \| Sophophora \| melanogaster group \| melanogaster subgroup
		Go to NCBI Taxonomy (7240)
		Encyclopedia of life
		Wikipedia

Projects:
			National Center for Biotechnology Information: NCBI Insect Genomes Project



			The Genome Sequencing Center at Washington University: Drosophila simulans Sequencing

Publication:

Clark AG, Eisen MB, Smith DR et. al.

(2007)

Evolution of genes and genomes on the Drosophila phylogeny.

Nature 450, 203-218.

10.1038/nature06341

Picture Source

Taxonomy:	Eukaryota \| Opisthokonta \| Metazoa \| Eumetazoa \| Bilateria \| Protostomia \| Ecdysozoa \| Panarthropoda \| Arthropoda \| Mandibulata \| Pancrustacea \| Hexapoda \| Insecta \| Dicondylia \| Pterygota \| Neoptera \| Holometabola \| Diptera \| Brachycera \| Muscomorpha \| Eremoneura \| Cyclorrhapha \| Schizophora \| Acalyptratae \| Ephydroidea \| Drosophilidae \| Drosophilinae \| Drosophilini \| Drosophila \| Sophophora \| melanogaster group \| melanogaster subgroup
Comment:	This line is derived from flies collected in Kenya. It was inbred by sib-pair mating for seven generations by John Roote in the Ashburner lab, and an additional six generations at UC-Davis.
		Go to NCBI Taxonomy (7240)
		Encyclopedia of life
		Wikipedia

Publication:

McManus CJ, Coolon JD, Eipper-Mains J et. al.

(2014)

Evolution of splicing regulatory networks in Drosophila.

Genome Res 24, 786-796.

10.1101/gr.161521.113

Picture Source

Taxonomy:	Eukaryota \| Opisthokonta \| Metazoa \| Eumetazoa \| Bilateria \| Protostomia \| Ecdysozoa \| Panarthropoda \| Arthropoda \| Mandibulata \| Pancrustacea \| Hexapoda \| Insecta \| Dicondylia \| Pterygota \| Neoptera \| Holometabola \| Diptera \| Brachycera \| Muscomorpha \| Eremoneura \| Cyclorrhapha \| Schizophora \| Acalyptratae \| Ephydroidea \| Drosophilidae \| Drosophilinae \| Drosophilini \| Drosophila \| Sophophora \| melanogaster group \| melanogaster subgroup
Comment:	This line is derived from a white501 stock obtained from the Drosophila Species Stock Center in Bowling Green, OH in 1997. It was subsequently inbred by sib-pair mating for nine generations by Daniel Barbash at UC-Davis. The provenance of this line is poorly documented. However, it is likely derived from a Drosophila simulans stock collected in North America in the 1940's.
		Go to NCBI Taxonomy (7240)
		Encyclopedia of life
		Wikipedia

Projects:
			National Center for Biotechnology Information: NCBI Insect Genomes Project



			The Genome Sequencing Center at Washington University: Drosophila simulans Sequencing

Publications:

Hu TT, Eisen MB, Thornton KR et. al.

(2013)

A second-generation assembly of the Drosophila simulans genome provides new insights into patterns of lineage-specific divergence.

Genome Res 23, 89-98.

10.1101/gr.141689.112

Clark AG, Eisen MB, Smith DR et. al.

(2007)

Evolution of genes and genomes on the Drosophila phylogeny.

Nature 450, 203-218.

10.1038/nature06341

Proteins	56
Sequences	39340
Amino Acids	44818212
Domains	334
Species	1706
Projects	12173
WGS-Projects	5287
Publications	697

National Center for Biotechnology Information: NCBI Insect Genomes Project